PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00446.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 296aa    MW: 31462.3 Da    PI: 8.2904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00446.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15179224755
                           AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   r+++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zpz_sc00446.1.g00050.1.am.mk 179 RRRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMNG 224
                                   6777.**********44465..************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.77174232IPR001471AP2/ERF domain
SMARTSM003803.0E-26174238IPR001471AP2/ERF domain
PRINTSPR003674.1E-6175186IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-19176233IPR016177DNA-binding domain
CDDcd000184.72E-11176233No hitNo description
Gene3DG3DSA:3.30.730.104.9E-24177233IPR001471AP2/ERF domain
PfamPF008473.7E-10179224IPR001471AP2/ERF domain
PRINTSPR003674.1E-6198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDRRQPESIP PHTPPTLRRR PPVVTSHYAS PQYGGGGYSH HQSSPAGWVS SSMPSSMPSS  60
SPSHHHHYQQ QQQLQFGGGV DDYHRGHVDL DQFSALMGAA SISTTTTTSS SRSSASTTYA  120
PSAASCWPTE AFTGAHSSSA ATVHANGIVD GSSRGDQHLQ VQPNCGDGDD ADAALVGGRR  180
RPWGKYAAEI RDSTRNGERV WIGTFDTPEA AALAYDQAAY SMNGPGAVRN FPVRRVQETL  240
RDLGLSGAAG AGTQAAPLHP QKIAQGQKGS WRGPDHGDLQ WVRQAEAGGR FWRAGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-20177234865ATERF1
2gcc_A2e-20177234865ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278832e-65KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459509.17e-44hypothetical protein SORBIDRAFT_02g005840
TrEMBLC5XCK58e-44C5XCK5_SORBI; Putative uncharacterized protein Sb02g005840
STRINGSb02g005840.12e-43(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-17ethylene response factor 1